Not sure I understand your question... Every pin name in the .fzp has to be assigned to a pin in the .svg, or you will have that big red square in the middle. But every pin in the .svg does not need to be assigned to a pin in the .fzp... If you have extra pins in the copper1/copper0 layers, they will appear as copper rings on you PCB with no connections. The pin ID:"name" can be whatever, does not make any difference...
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