At present doing this type of workflow tends to confuse Fritzing and corrupts the project. Current best practice is to make all your changes in one view (breadboard or schematic typically) then switch to the other 2 and do the routing for those views following the rats nest lines. That implies you would need to save a copy of your project with the changes completed in only one view and make furhter changes in a copy of that and then redo the other two views to make changes later. It is less than optimal, but is what works at present.
Peter