Basically you only work in one view, ie SCH, and then trust it in the others. FZ doesn't really work in two directions like it should. You must have changed components in the PCB, which will muckup the SCH, or didn't trust the ratsnests from the SCH and made the traces different in the PCB.
From experience of helping others, at this stage it would probably need an expert to fix the original. I would start again with a new one using the original next to it to copy.
If you want to upload the orig here using the 7th button, I can have a look at it.