If you load the part in from another view, the schematic may not be line up until you move it and it snaps into place. It is not a question of how to do it. It's is really simple once you understand it... Actually, I think both ways are right depending on what you want to do with it... It's just FZ fell short on instructions... They should have included an example of using the LM358 op-amp sub-parts...
Did you read that about the 0,0 squares and the easy fix? ... I just forgot to check... It is weird that I can't make them bigger in the graphics editor...