Not the pcb svg in that part is SMD and thus isn't suitable for through hole which you need. Through hole needs both copper1 and copper0 layers and SMD only uses copper1. You may be best to copy the pcb svg of a 5 pin header and move the pads around (they will also have the likely appropriate hole size of .038 in set). If you get stuck remember you can upload you non working part and one of us will assist. Parts making is complex and poorly documented.
Peter