Hi Old_Grey,
Just in case you didn't catch it, the black circle in the heat sink of your FET is in the copper layers and it drills a 4mm hole through your board. You have also duplicated the elements in the embedded copper1/copper0 layer into the copper1 layer.
<g id="copper1" gorn="0.3.0.0">
<circle id="nonconn0" stroke-width="0" gorn="0.3.0.0.0" cy="1.7912009" cx="5.2834153" ...
<g id="copper0" gorn="0.3.0.0.7">
<circle id="nonconn1" stroke-width="0" gorn="0.3.0.0.7.0" cy="1.7912009" cx="5.2834153" ...
</g>
</g>