I just replaced my pcb.svg file with the one from your part and all is well, the new pads show up and the fonts are the correct size. So now all I need to do is go look at the xml and see if I can figure out how to do this for future reference. Although interestingly enough, in parts editor the fonts are again too small (but since I don't intend on saving it, at this point it doesn't matter for now but I would like to find a fix before uploading the part!).
While I'm here another question: while the graphic standards suggest no silkscreen text in the part I'd like to put a label of the form PM6078-004 DC-DC Converter (and possibly +5V GND and +9V and 9V GND on the appropriate pins) as this is an odd part. Is that acceptable?
Peter Van Epp