OK all done I think. Below is the completed part and a test sketch to verify the part is correct. The test sketch is a bit ugly because I don't care about routing, only that all the pins are verified to connect to what I think they should. In this case I used 25 pin and 5 pin single row connectors to provide a connection point for each pin in all 3 views and made a connection for each pin, then made sure the connection looked correct in the other 2 views (I started with breadboard). As noted in the last reply it looks like Illustrator has changed their translate parameters and fritzing hasn't kept up. To fix that in schematic with Inkscape I ungrouped everything which usually (and in this case) removes all the translates (which I like to do anyway as it leaves the coordinate system 1 to 1 which is valuable) and then when I was finished did a select all and grouped everything then named the resulting group schematic to set the correct layer id. As noted pcb was recreated from an existing part in Inkscape so it didn't have this problem. As well all the svgs were edited with vi and all instances of px were removed as if the font-size commands have px on the end Fritzing will set the font size to 0 when the part is edited.
part:
Embedded Micro Mojo v5.fzpz (34.8 KB)
test sketch:
Embedded Micro Mojo v5 test sketch.fzz (107.5 KB)
Peter