So I think I have it figured out. I removed all the extra groups, saved the svg over the last updated fritzing svg. Opened the part in the editor and reassigned the the pins and now it works.
Here is the updated part. It in not ready for publishing because it uses an IC schematic currently but for normal use it works.IN-16 Nixie Tube.fzpz (14.0 KB)
If anyone could try it out with a few connections and make sure it looks correct that would be most appreciated.