The pads on the pcb supplied are set to a hole size of .038 in which fits the .1 headers so if you move the pads to the correct places and change silkscreen if you want to, you should be good. I need to poke more at why changing the font family didn't fix breadboard but I haven't yet.
edit: A replacement part where breadboard has correct text. I had to remove all translates, and then all the tspan text and pxs from font-size to get here and I'm still not sure why, but this is at least better and I have broken and fixed files to ponder ...
tp4056.fzpz (12.0 KB)
Peter